average_tiles_ND

omnipose.utils.average_tiles_ND(y, subs, shape)

average results of network over tiles

Parameters

• y (float, [ntiles x nclasses x bsize x bsize]) -- output of cellpose network for each tile

• subs (list) -- list of slices for each subtile

• shape (int, list or tuple) -- shape of pre-tiled image (may be larger than original image if image size is less than bsize)

Returns

yf -- network output averaged over tiles

Return type

float32, [nclasses x Ly x Lx]