normalize_img#

cellpose_omni.transforms.normalize_img(img, axis=- 1, invert=False, omni=False)[source]#

normalize each channel of the image so that so that 0.0=1st percentile and 1.0=99th percentile of image intensities

optional inversion

Parameters
  • img (ND-array (at least 3 dimensions)) --

  • axis (channel axis to loop over for normalization) --

Returns

img -- normalized image of same size

Return type

ND-array, float32